ReadStore Basic

The Lean Solution for Managing NGS and Omics Data

• Database for FASTQ, analysis and metadata files
• Project management and collaborative workspace
• APIs for Terminal, Python and R for automation of data analysis

ReadStore is a platform for storing, managing, and integrating omics data. It speeds up analysis and offers a simple way of managing and sharing NGS omics datasets, metadata and processed data (Processed Data). Built-in project and metadata management structures your workflows and a collaborative user interface enhances teamwork — so you can focus on generating insights.

The integrated API enables you to directly retrieve data from ReadStore via the terminal Command-Line Interface (CLI) or Python / R SDKs.

The ReadStore Basic version offers a local web server with simple user management. If you need organization-wide deployment, advanced user and group management, or cloud integration, please check the ReadStore Advanced versions and reach out to info@evo-byte.com.

Find more information on www.evo-byte.com/readstore

Quickstart

ReadStore Basic allows you to manage NGS and omics data through a web interface and command-line tools. Follow these steps to get started:

1.Install ReadStore Basic

pip3 install readstore-basic

2.Start the server:

readstore-server

3.Access the web app

Open your browser and navigate to http://localhost:8501

4.Upload FASTQ datasets

In the UI, navigate to the Upload Page and click Import to ingest FASTQ files.

Check In datasets after QC is completed.

5.Install the CLI (optional)

pip3 install readstore-cli

6.Configure the CLI

Run readstore configure and enter your username and token

7.Upload FASTQ files

Use readstore upload myfile_r1.fastq to upload sequencing data